Register Seriation Based on OPTICS

Use ordering points to identify the clustering structure (OPTICS) for seriate().

Usage

register_optics()

Value

Nothing.

Details

Registers the method "optics" for seriate(). This method applies the OPTICS ordering algorithm implemented in dbscan::optics() to create an ordering.

Note: Package dbscan needs to be installed.

References

Mihael Ankerst, Markus M. Breunig, Hans-Peter Kriegel, Joerg Sander (1999). OPTICS: Ordering Points To Identify the Clustering Structure. ACM SIGMOD international conference on Management of data, ACM Press, pp. 49-60. doi:10.1145/304181.304187

See also

dbscan::optics().

Other seriation: register_DendSer(), register_GA(), register_smacof(), register_tsne(), register_umap(), register_vegan(), registry_for_seriation_methods, seriate(), seriate_best()

Examples

if (FALSE) { # \dontrun{
register_optics()
get_seriation_method("dist", "optics")

d <- dist(random.robinson(50, pre=TRUE, noise=.1))

o <- seriate(d, method = "optics")
pimage(d, o)
} # }